Publications

  1. Weeks R, Mehta S, and Zhang J. Genetically encodable biosensors for Ras activity. RSC Chem Biol. 2024; 5: 312-320.
  2. Frei MS, Mehta S, and Zhang J. Next-generation genetically encoded fluorescent biosensors illuminate cell signaling and metabolism. Annu Rev Biophys. 2024; 53. PMID 38346245
  3. Hardy JC, Pool EH, Bruystens JGH, Zhou X, Li Q, Zhou DR, Palay M, Tan G, Chen L, Choi JLC, Lee HN, Strack S, Wang D, Taylor SS, Mehta S, and Zhang J. Molecular determinants and signaling effects of PKA RIα phase separation. Mol Cell. 2024.
  4. Lyons AC, Mehta S, and Zhang J. Fluorescent biosensors illuminate the spatial regulation of cell signaling across scales. Biochem J. 2023; 480(20): 1693–1717. PMID 37903110
  5. Elias R, Zhu Y, Su Q, Ghirlando R, Zhang J, and Deshmukh L. Reversible phase separation of ESCRT protein ALIX through tyrosine phosphorylation. Sci Adv. 2023; 9(28): eadg3913. PMID 37450591
  6. Posner C, Mehta S, and Zhang J. Fluorescent biosensor imaging meets deterministic mathematical modelling: quantitative investigation of signalling compartmentalization. J Physiol. 2023; 601(19): 4227-4241. PMID 37747358
  7. Greenwald E*, Posner C*, Bharath A, Lyons A, Salmeron C, Sriram K, Wiley SZ, Insel PA†, and Zhang J†. GPCR signaling measurement and drug profiling with an automated live-cell microscopy system. *Equal contribution. †Co-corresponding authors. ACS Sensors. 2023; 8(1): 19-27. PMID 36602887
  8. Schmitt DL, Mehta S, Zhang J. Study of spatiotemporal regulation of kinase signaling using genetically encodable molecular tools. Curr Opin Chem Biol. 2022; 71:102224. PMID 36347198
  9. Kwon Y, Mehta S, Clark M, Walter G, Zhong Y, Lee HN, Sunahara RK, Zhang J. Non-canonical beta-adrenergic activation of ERK at endosomes. Nature. 2022; 611(7934): 173-179. PMID 36289326
  10. Kwon Y, Kim DH, Jeong MG, Hong MT, Park S, Chang Y, Zhou K, Park SY, Zhang J, Ryu SH. Dimerization of beta2-adrenergic receptor is responsible for the constitutive activity subjected to inverse agonism. Cell Chem Biol. 2022; 29(10): 1532-1540. PMID 36167077
  11. Hashizume R, Fujii H, Mehta S, Ota K, Qian Y, Zhu W, Drobizhev M, Nasu Y, Zhang J, Bito H, Campbell RE. A genetically encoded far-red fluorescent calcium ion biosensor derived from a biliverdin-binding protein. Protein Sci. 2022; 31(10): e4440. PMID 36173169
  12. Weeks R, Zhou X, Yuan TL, Zhang J. Fluorescent biosensor for measuring Ras activity in living cells. J Am Chem Soc. 2022; 144(38): 17432-17440. PMID 36122391
  13. Schmitt DL, Curtis SD, Lyons AC, Zhang JF, Chen M, He CY, Mehta S, Shaw RJ, Zhang J. Spatial regulation of AMPK signaling revealed by a sensitive kinase activity reporter. Nat Commun. 2022; 13: 3856. PMID 35790710
  14. Zhong Y, Zhou X, Guan KL, Zhang J. Rheb regulates nuclear mTORC1 activity independent of farnesylation. Cell Chem Biol. 2022; 29(6): 1037-1045.e4. PMID 35294906
  15. Zhou X, Mehta S, Zhang J. AktAR and Akt-STOPS: Genetically encodable molecular tools to visualize and perturb Akt kinase activity at different subcellular locations in living cells. Current Protocols.. 2022; 2: e416. PMID 35532280
  16. Mehta S and Zhang J. Liquid-liquid phase separation drives cellular function and dysfunction in cancer. Nat Rev Cancer. 2022; 22(4): 239-252. PMID 35149762
  17. Hardy JC, Mehta S, Zhang J. Measuring spatiotemporal cAMP dynamics within an endogenous signaling compartment using FluoSTEP-ICUE. Methods Mol Biol. 2022; 2483: 351-366. PMID 35286687.
  18. Zhang JF, Mehta S, Zhang J. Protocol for reading and imaging live-cell PKA activity using ExRai-AKAR2. STAR Protoc. 2022; 3(1): 101071. PMID 35036953
  19. Chen M, Sun T, Zhou X, Zhang J. A sensitive fluorescent Akt biosensor reveals lysosome-selective regulation of lipid second messengers and kinase activity. ACS Cent Sci. 2021; 7(12): 2009-2020. PMID 34963894
  20. Valentine JM, Ahmadian M, Keinan O, Abu-Odeh M, Zhao P, Zhou X, Keller MP, Gao H, Yu RT, Liddle C, Downes M, Zhang J, Lusis AJ, Attie AD, Evans RM, Rydén M, Saltiel AR. β3-adrenergic receptor downregulation leads to adipocyte catecholamine resistance in obesity. J Clin Invest. 2022; 132(2): e153357. PMID 34847077
  21. Lee YU, Posner C, Nie Z, Zhao J, Li S, Bopp SE, Wisna GBM, Ha J, Song C, Zhang J, Yang S, Zhang X, Liu Z. Organic hyperbolic material assisted illumination nanoscopy. Adv Sci. 2021; 8(22): 2102330. PMC8596098
  22. Zhang JZ, Mehta S, Zhang J. Liquid-liquid phase separation: a principal organizer of the cell’s biochemical activity architecture. Trends Pharmacol Sci. 2021; 42(10): 845-856. PMID 34373114
  23. Su Q, Mehta S, Zhang J. Liquid-liquid phase separation: orchestrating cell signaling through time and space. Mol Cell. 2021; 81(20): 4137-4146. PMID 34619090
  24. Lin W, Mo GCH, Mehta S, Zhang J. DrFLINC contextualizes super-resolution activity imaging. J Am Chem Soc. 2021; 143(37): 14951-14955. PMID 34516108
  25. Zhang JZ, Tenner B, Mehta S, Zhang J. Protocol for using Fluorescent Sensors Targeted to Endogenous Proteins (FluoSTEPs) to measure microdomain-specific signaling events. STAR Protoc. 2021; 2(3): 100693. PMID 34467224
  26. Liu L, Limsakul P, Meng X, Huang Y, Harrison RES, Huang TS, Shi Y, Yu Y, Charupanit K, Zhong S, Lu S, Zhang J, Chien S, Sun J, Wang Y. Integration of FRET and sequencing to engineer kinase biosensors from mammalian cell libraries. Nat Commun. 2021; 12(1): 5031. PMID 34413312
  27. Keyes J, Mehta S, Zhang J. Strategies for multiplexed biosensor imaging to study intracellular signaling networks. Methods Mol Biol. 2021; 2350: 1-20. PMID 34331275
  28. Abu-Odeh M, Zhang Y, Reilly SM, Ebadat N, Keinan O, Valentine JM, Hafezi-Bakhtiari M, Ashayer H, Mamoun L, Zhou X, Zhang J, Yu RT, Dai Y, Liddle C, Downes M, Evans RM, Kliewer SA, Mangelsdorf DJ, Saltiel AR. FGF21 promotes thermogenic gene expression as an autocrine factor in adipocytes. Cell Rep. 2021; 35(13): 109331. PMID 34192547
  29. Ahn SH, Qin S, Zhang JZ, McCammon JA, Zhang J, and Zhou HX. Characterizing protein kinase A (PKA) subunits as macromolecular regulators of PKA RIα liquid-liquid phase separation. J Chem Phys. 2021; 154(22): 221101. PMID 34241191
  30. Bohrer CH, Yang X, Thakur S, Weng X, Tenner B, McQuillen R, Ross B, Wooten M, Chen X, Zhang J, Roberts E, Lakadamyali M, Xiao J. A pairwise Distance Distribution Correction (DDC) algorithm to eliminate blinking-caused artifacts in super-resolution microscopy. Nat Methods. 2021; 18(6): 669-677. PMID 34059826.
  31. Tenner B*, Zhang JZ*, Kwon Y, Pessino V, Feng S, Huang B, Mehta S†, Zhang J†. FluoSTEPs: Fluorescent biosensors for monitoring compartmentalized signaling within endogenous microdomains. *Equal contribution. †Co-corresponding authors. Sci Adv. 2021; 7(21): eabe4091. PMID 34020947.
  32. Mehta S and Zhang J. Biochemical activity architectures visualized – Using genetically encoded fluorescent biosensors to map the spatial boundaries of signaling compartments. Acc Chem Res. 2021; 54(10): 2409-2420. PMID 33949851
  33. Lei Y*, Zhang J*, Schiavon CR, He M, Chen L, Shen H, Zhang Y, Yin Q, Cho Y, Andrade L, Shadel GS, Hepokoski M, Lei T, Wang H, Zhang J, Yuan JXJ, Malhotra A, Manor U†, Wang S†, Yuan Z†, Shyy JY†. SARS-CoV-2 spike protein impairs endothelial function via downregulation of ACE 2. *Equal contribution. †Co-corresponding authors. Circ Res. 2021; 128(9): 1323-1326. PMID 33784827
  34. Roebroek T, Vandenberg W, Sipieter F, Hugelier S, Stove C, Zhang J, Dedecker P. Simultaneous readout of multiple FRET pairs using photochromism. Nat Commun. 2021; 12(1): 2005. PMID 33790271
  35. Lee YU, Zhao J, Ma Q, Khorashad LK, Posner C, Li G, Wisna GBM, Burns Z, Zhang J, Liu Z. Metamaterial assisted illumination nanoscopy via random super-resolution speckles. Nat Commun. 2021; 12(1): 1559. PMID 33692354
  36. Lee YU, Li S, Bopp SE, Zhao J, Nie Z, Posner C, Yang S, Zhang X, Zhang J, Liu Z. Unprecedented fluorophore photostability enabled by low-loss organic hyperbolic materials. Adv Mater. 2021; 33(9): e2006496. PMID 33506542
  37. Lee YU, Posner C, Zhao J, Zhang J, Liu Z. Imaging of cell morphology changes via metamaterial-assisted photobleaching microscopy. Nano Lett. 2021; 21(4): 1716-1721. PMID 33576637
  38. Fong MY, Yan W, Ghassemian M, Wu X, Zhou X, Cao M, Jiang L, Wang J, Liu X, Zhang J, Wang SE. Cancer-secreted miRNAs regulate amino-acid-induced mTORC1 signaling and fibroblast protein synthesis. EMBO Rep. 2021; 22(2): e51239. PMID 33345445
  39. Zhang JF*, Liu B*, Hong I*, Mo A, Roth RH, Tenner B, Lin W, Zhang JZ, Molina RS, Drobizhev M, Hughes TE, Tian L, Huganir RH†, Mehta S†, Zhang J†. An ultrasensitive biosensor for high-resolution kinase activity imaging in awake mice. *Equal contribution. †Co-corresponding authors. Nat Chem Biol. 2021; 17(1): 39-46. PMID 32989297
  40. Zhang JF, Mehta S, Zhang J. Signaling microdomains in the spotlight: visualizing compartmentalized signaling using genetically encoded fluorescent biosensors. Annu Rev Pharmacol Toxicol. 2021; 61: 587-608. PMID 3341579
  41. Zhou X, Zhong Y, Molinar-Inglis O, Kunkel MT, Chen M, Sun T, Zhang J, Shyy JY, Trejo J, Newton AC, Zhang J. Location-specific inhibition of Akt reveals regulation of mTORC1 activity in the nucleus. Nat Commun. 2020; 11(1): 6088. PMID 33257668
  42. Tenner B, Getz M, Ross B, Ohadi D, Bohrer CH, Greenwald E, Mehta S, Xiao J, Rangamani P†, Zhang J†. Spatially compartmentalized phase regulation of a Ca2+-cAMP-PKA oscillatory circuit. †Co-corresponding authors. eLife. 2020; 9: e55013. PMID 33201801
  43. Zhou X, Mehta S, Zhang J. Genetically encodable fluorescent biosensors light up signaling networks. Trends Biochem Sci. 2020; 45(10): 889-905. PMID 32660810
  44. Zhang JZ, Lu TW, Stolerman LM, Tenner B, Yang JR, Zhang JF, Falcke M, Rangamani P, Taylor SS, Mehta S, Zhang J. Phase separation of a regulatory subunit of protein kinase A controls cAMP compartmentation and oncogenic signaling. Cell. 2020; 182(6): 1531-1544. PMID 32846158
  45. Zhang JZ, Nguyen AH, Miyamoto S, Brown JH, McCulloch, AD, Zhang J. Histamine-induced biphasic activation of RhoA allows for persistent RhoA signaling. PLoS Biol. 2020; 18(9): e3000866. PMID 32881857
  46. Lee YU, Zhao J, Mo GCH, Li S, Li G, Ma Q, Yang Q, Lal R, Zhang J, Liu Z. Metamaterial-assisted photobleaching microscopy with nanometer scale axial Resolution. Nano Lett. 2020; 20(8): 6038. PMID 32597659
  47. Keyes J, Ganesan A, Molinar-Inglis O, Hamidzadeh A, Zhang JF, Ling M, Trejo J, Levchenko A, Zhang J. Signaling diversity enabled by Rap1-regulated plasma membrane ERK with distinct temporal dynamics. eLife. 2020; 9: e57410. PMID 32452765
  48. Mo GCH, Posner C, Rodriguez E, Sun T, Zhang J. A rationally enhanced red fluorescent protein expands the utility of FRET biosensors. Nat Commun. 2020; 11(1): 1848. PMID 32296061
  49. Lee HN, Mehta S, Zhang J. Recent advances in the use of genetically encodable optical tools to elicit and monitor signaling events. Curr Opin Cell Biol. 2020; 63: 114-124. PMID 32058267
  50. Wijaya J, Vo BT, Liu J, Xu B, Wu G, Wang Y, Peng J, Zhang J, Janke LJ, Orr BA, Yu J, Roussel MF, Schuetz JD. An ABC transporter drives medulloblastoma pathogenesis by regulating Sonic Hedgehog signaling. Cancer Res. 2020; 80(7): 1524-1537. PMID 31948942
  51. Schmitt DL, Mehta S, Zhang J. Illuminating the kinome: visualizing real-time kinase activity in biological systems using genetically encoded fluorescent protein-based biosensors. Curr Opin Chem Biol. 2020; 54: 63-69. PMID 31911398
  52. Hertel F, Li S, Chen M, Pott L, Mehta S, Zhang J. Fluorescent biosensors for multiplexed imaging of phosphoinositide dynamics. ACS Chem Biol. 2020; 15(1): 33-38. PMID 31855412
  53. Ohadi D, Schmitt DL, Calabrese B, Halpain S, Zhang J, Rangamani P. Computational modeling reveals frequency modulation of calcium-cAMP/PKA pathway in dendritic spines. Biophys J. 2019; 117(10): 1963-1980. PMID: 31668749
  54. Qin Q, Laub S, Shi Y, Ouyang M, Peng Q, Zhang J, Wang Y, Lu. S. Fluocell for ratiometric and high-throughput live-cell image visualization and quantitation. Front Phys. 2019; 7: 00154. PMID 33163483
  55. Lin W, Mehta S, Zhang J. Genetically encoded fluorescent biosensors illuminate kinase signaling in cancer. J Biol Chem. 2019; 294(40): 14814-14822. PMID 31434714
  56. Clister T, Greenwald E, Baillie GS, and Zhang J. AKAP95 organizes a nuclear microdomain to control local cAMP and nuclear PKA activation. Cell Chem Biol. 2019; 26(6): 885-891.e4. PMID 30982750
  57. He M, Huang TS, Li S, Hong HC, Chen Z, Martin M, Zhou X, Huang HY, Su SH, Zhang J, Wang WT, Kang J, Huang HD, Zhang J, Chien S, Shyy JY. Atheroprotective flow upregulates ITPR3 (Inositol 1,4,5-Trisphosphate Receptor 3) in vascular endothelium via KLF4 (Krüppel-Like Factor 4)-mediated histone modifications. Arterioscler Thromb Vasc Biol. 2019; 39(5): 902-914. PMID 30917677
  58. Ross B, Wong SH, Snell NE, Zhang J, Rizzo MA. Triple fluorescence anisotropy reporter imaging in living cells. Bio-protocol. 2019; 9(9): e3226. PMID 31423459
  59. Qian Y, Piatkevich KD, Mc Larney B, Abdelfattah AS, Mehta S, Murdock MH, Gottschalk S, Molina RS, Zhang W, Chen Y, Wu J, Drobizhev M, Hughes TE, Zhang J, Schreiter ER, Shoham S, Razansky D, Boyden ES, Campbell RE. A genetically-encoded near-infrared fluorescent calcium ion indicator. Nat Methods. 2019; 16(2): 171-174. PMID 30664778
  60. Greenwald E, Mehta S, Zhang J. Genetically encoded fluorescent biosensors illuminate the spatiotemporal regulation of signaling networks. Chem Rev. 2018; 118 (24): 11707-11794. PMID 30550275
  61. Hard R, Li N, He W, Ross B, Mo GCH, Peng Q, Stein RL, Komives E, Wang Y, Zhang J, Wang W. Deciphering and engineering chromodomain-methyllysine peptide recognition. Sci Adv. 2018; 4(11): eaau1447. PMID 30417094
  62. Mehta S†*, Zhang Y*, Roth RH*, Zhang JF, Mo A, Tenner B, Huganir RL†, Zhang J†. Single-fluorophore biosensors for sensitive and multiplexed detection of signaling activities. *Equal contribution. †Co-corresponding authors. Nat Cell Biol. 2018; 20(10): 1215-1225. PMID 30250062
  63. Liu SL*, Wang ZG*, Hu Y, Xin Y, Singaram I, Gorai S, Zhou X, Shim Y, Min JH, Gong LW, Hay N, Zhang J, Cho W. Quantitative lipid imaging reveals a new signaling function of phosphatidylinositol-3,4-bisphophate: Isoform- and site-specific activation of Akt. *Equal contribution. Mol Cell. 2018; 71(6): 1092-1104. PMID 30174291
  64. Grimsey NJ, Narala R, Rada CC, Mehta S, Stephens BS, Kufareva I, Lapek J, Gonzalez DJ, Handel TM, Zhang J, Trejo J. A ryrosine switch on NEDD4-2 E3 ligase transmits GPCR inflammatory signaling. Cell Rep. 2018; 24(12): 3312-3323. PMID 30232011
  65. Ross BL, Tenner B, Markwardt ML, Zviman A, Shi G, Kerr JP, Snell NE, McFarland JJ, Mauban JR, Ward CW, Rizzo MA†, Zhang J†. Single-color, ratiometric biosensors for detecting signaling activities. †Co-corresponding authors. eLife. 2018; 7: e35458. PMID 29968564
  66. Chen W*, Yan Z*, Li S*, Huang N, Huang X, Zhang J†, Zhong S†. RNAs as proximity labeling media for identifying nuclear speckle positions relative to the genome. *Equal contribution. †Co-corresponding authors. iScience. 2018; 4: 204-215. PMID 30240742
  67. Oldach LM, Gorshkov K, Mills WT, Zhang J†, Meffert MK†. A biosensor for MAPK-dependent Lin28 signaling. †Co-corresponding authors. Mol Biol Cell. 2018; 29(10): 1157-1167. PMID 29540527
  68. Hertel F, Mo GCH, Dedecker P, Zhang J. Observing the assembly of protein complexes in living eukaryotic cells in super-resolution using refSOFI. Methods Mol Biol. 2018; 1764: 267-277. PMID 29605920
  69. Ni Q, Mehta S, Zhang J. Live-cell imaging of cell signaling using genetically encoded fluorescent reporters. FEBS J. 2018; 285(2): 203-219. PMID 28613457
  70. Chen Y, Booth C, Wang H, Wang RX, Terzi D, Zachariou V, Jiao K, Zhang J, Wang Q. Effective attenuation of adenosine A1R signaling by neurabin requires oligomerization of neurabin. Mol Pharmacol. 2017; 92(6): 630-639. PMID 28954816
  71. Mehta S and Zhang J. Illuminating the cell’s biochemical activity architecture. Biochemistry. 2017; 56(39): 5210-5213. PMID 28718621
  72. Nygren PJ, Mehta S, Schweppe DK, Langeberg LK, Whiting JL, Weisbrod CR, Bruce JE, Zhang J, Veesler D, Scott JD. Intrinsic disorder within AKAP79 fine-tunes anchored phosphatase activity toward substrates and inhibitor drugs. eLife. 2017; 6: e30872. PMID 28967377
  73. Mo GCH, Ross B, Hertel F, Manna P, Yang X, Greenwald E, Booth C, Plummer AM, Tenner B, Chen Z, Wang Y, Kennedy EJ, Cole PA, Fleming KG, Palmer A, Jimenez R, Xiao J, Dedecker P, Zhang J. Genetically encoded biosensors for visualizing live-cell biochemical activity at superresolution. Nat Methods. 2017; 14(4): 427-434. PMID 28288122
  74. Gorshkov K, Mehta S, Ramamurthy S, Ronnett GV, Zhou FQ, Zhang J. AKAP-mediated feedback control of cAMP gradients in developing hippocampal neurons. Nat Chem Biol. 2017; 13(4): 425-431. PMID 28192412
  75. Rodriguez EA, Campbell RE, Lin JY, Lin MZ, Miyawaki A, Palmer AE, Shu X, Zhang J, Tsien RY. The growing and glowing toolbox of fluorescent and photoactive proteins. Trends Biochem Sci. 2017; 42(2): 111-129. PMID 27814948
  76. Newman RH and Zhang J. Integrated strategies to gain a systems-level view of dynamic signaling networks. Methods Enzymol. 2017; 589: 133-170. PMID 28336062
    77. Tenner B, Mehta S, Zhang J. Optical sensors to gain mechanistic insights into signaling assemblies. Curr Opin Struct Biol. 2016; 41: 203-210. PMID 27611602
  77. Zhou X, Li S, Zhang J. Tracking the activity of mTORC1 in living cells using genetically encoded FRET-based biosensor TORCAR. Curr Protoc Chem Biol. 2016; 8(4): 225-233. PMID 27925667
  78. Hung WC*, Yang JR*, Yankaskas CL, Wong BS, Wu PH, Pardo-Pastor C, Serra SA, Chiang MJ, Gu Z, Wirtz D, Valverde MA, Yang JT†, Zhang J†, Konstantopoulos K†. Confinement-sensing and signal optimization via Piezo1/PKA and Myosin II pathways. *Equal contribution. †Co-corresponding authors. Cell Rep. 2016; 15(7):1430-1441. PMID 27160899
  79. Moore BS, Stepanchick AN, Tewson PH, Hartle CM, Zhang J, Quinn AM, Hughes TE, Mirshahi T. Cilia have high cAMP levels that are inhibited by Sonic Hedgehog-regulated calcium dynamics. Proc Natl Acad Sci USA. 2016; 113(46): 13069-13074. PMID 27799542
  80. Conlon P, Gelin-Licht R, Ganesan A, Zhang J, Levchenko A. Single-cell dynamics and variability of MAPK activity in a yeast differentiation pathway. Proc Natl Acad Sci USA. 2016; 113(40): E5896-E5905. PMID 27651485
  81. Ross B, Mehta S, Zhang J. Molecular tools for acute spatiotemporal manipulation of signal transduction. Curr Opin Chem Biol. 2016; 34:135-142. PMID 27639090
  82. Hertel F, Mo GCH, Duwé S, Dedecker P, Zhang J. RefSOFI for mapping nanoscale organization of protein-protein interactions in living cells. Cell Rep. 2016; 14(2): 390-400. PMID 26748717
  83. Depry C, Mehta S, Li R, Zhang J. Visualization of compartmentalized kinase activity dynamics using adaptable bimKARs. Chem Biol. 2015; 22(11): 1470-9. PMID 26548610
  84. Mehta S and Zhang J. Dynamic visualization of calcium-dependent signaling in cellular microdomains. Cell Calcium. 2015. 58(4): 333-41. PMID 25703691
  85. Yaniv Y, Ganesan A, Yang D, Ziman BD, Lyashkov AE, Levchenko A, Zhang J, Lakatta EG. Real-time relationship between PKA biochemical signal network dynamics and increased action potential firing rate in heart pacemaker cells: kinetics of PKA activation in heart pacemaker cells. J Mol Cell Cardiol. 2015; 86: 168-78. PMID 26241846
  86. Hu J, Neiswinger J, Zhang J, Zhu H, Qian J. Systematic prediction of scaffold proteins reveals new design principles in scaffold-mediated signal transduction. PLoS Comput Biol. 2015; 11(9): e1004508. PMID 26393507
  87. Sample V, Ramamurthy S, Gorshkov K, Ronnett GV, Zhang J. Polarized activities of AMPK and BRSK in primary hippocampal neurons. Mol Biol Cell. 2015; 26(10): 1935-1946. PMID 25788287
  88. Karlsson I, Zhou X, Thomas R, Smith AT, Bonner MY, Bakshi P, Banga AK, Bowen JP, Qabaja G, Ford SL, Ballard MD, Petersen KS, Li X, Chen G, Ogretmen B, Zhang J, Watkins EB, Arnold RS, Arbiser JL. Solenopsin A and analogs exhibit ceramide-like biological activity. Vasc Cell. 2015; 7: 5. PMID 26015865
  89. Miyamoto T†, Rho E, Sample V, Akano H, Magari M, Ueno T, Gorshkov K, Chen M, Tokumitsu H, Zhang J†, Inoue T†. Compartmentalized AMPK signaling illuminated by genetically encoded molecular sensors and actuators. †Co-corresponding authors. Cell Rep. 2015; 11(4): 657-670. PMID 25892241
  90. Ding Y, Li J, Enterina JR, Shen Y, Zhang I, Tewson PH, Mo GCH, Zhang J, Quinn AM, Hughes TE, Maysinger D, Alford SC, Zhang Y, Campbell RE. Ratiometric biosensors based on dimerization-dependent fluorescent protein exchange. Nat Methods. 2015; 12(3): 195-198. PMID 25622108
  91. Zhou X, Clister TL, Lowry PR, Seldin MM, Wong GW, Zhang J. Dynamic visualization of mTORC1 activity in living cells. Cell Rep. 2015; 10(10): 1767-1777. PMID 25772363
  92. Clister T, Mehta S, and Zhang J. Single-cell analysis of G-protein signal transduction. J Biol Chem. 2015; 290(11): 6681-6688. PMID 25605723
  93. Dou H, Wang C, Wu X, Yao L, Zhang X, Teng S, Xu H, Liu B, Wu Q, Zhang Q, Hu M, Wang Y, Wang L, Wu Y, Shang S, Kang X, Zheng L, Zhang J, Raoux M, Lang J, Li Q, Su J, Yu X, Chen L, Zhou Z. Calcium influx activates adenylyl cyclase 8 for sustained insulin secretion in rat pancreatic beta cells. Diabetologia. 2015; 58(2): 324-233. PMID 25381556
  94. Weng HJ, Patel KN, Jeske NA, Bierbower SM, Zou W, Tiwari V, Zheng Q, Tang Z, Mo GCH, Wang Y, Geng Y, Zhang J, Guan Y, Akopian AN, Dong X. Tmem100 is a regulator of TRPA1-TRPV1 complex and contributes to persistent pain. Neuron. 2015; 85(4): 833-846. PMID 25640077
  95. Gorshkov K and Zhang J. Visualization of cyclic nucleotide dynamics in neurons. Front Cell Neurosci. 2014; 8: 395. PMID 25538560
  96. Newman RH, Zhang J, Zhu H. Toward a systems-level view of dynamic phosphorylation networks. Front Genet. 2014; 5: 263. PMID 25177341
  97. Mehta S, Aye-Han NN, Ganesan A, Oldach L, Gorshkov K, Zhang J. Calmodulin-controlled spatial decoding of oscillatory Ca2+ signals by calcineurin. eLife. 2014; 3: e03865. PMID 25056880
  98. Fu Q, Kim S, Soto D, De Arcangelis V, Dipilato L, Liu S, Xu B, Zhang J, Shi Q, Xiang YK. A long lasting β1 adrenergic receptor stimulation of cAMP/protein kinase A (PKA) signal in cardiac myocytes. J Biol Chem. 2014; 289(21): 14771-14781. PMID 24713698
  99. Haj Slimane Z, Bedioune I, Lechêne P, Varin A, Lefebvre F, Mateo P, Domergue-Dupont V, Dewenter M, Richter W, Conti M, El-Armouche A, Zhang J, Fischmeister R, Vandecasteele G. Control of cytoplasmic and nuclear protein kinase A by phosphodiesterases and phosphatases in cardiac myocytes. Cardiovasc Res. 2014; 102(1): 97-106. PMID 24550350
  100. Wang Y, Ho TG, Bertinetti D, Neddermann M, Franz E, Mo GCH, Schendowich LP, Sukhu A, Spelts RC, Zhang J, Herberg FW, Kennedy EJ. Isoform-selective disruption of AKAP-localized PKA using hydrocarbon stapled peptides. ACS Chem Biol. 2014; 9(3): 635-642. PMID 24422448
  101. Sample V, Mehta S, Zhang J. Genetically encoded molecular probes to visualize and perturb signaling dynamics in living biological systems. J Cell Sci. 2014; 127(Pt 6): 1151-1160. PMID 24634506
  102. Cazabat L, Ragazzon B, Varin A, Potier-Cartereau M, Vandier C, Vezzosi D, Risk-Rabin M, Guellich A, Schittl J, Lechêne P, Richter W, Nikolaev VO, Zhang J, Bertherat J, Vandecasteele G. Inactivation of the Carney complex gene 1 (PRKAR1A) alters spatiotemporal regulation of cAMP and cAMP-dependent protein kinase: a study using genetically-encoded FRET-based reporters. Human Mol Genet. 2014; 23(5): 1163-74. PMID 24122441
  103. Hertel F and Zhang J. Monitoring of post-translational modification dynamics with genetically encoded fluorescent reporters. Biopolymers. 2014; 101(2): 180-187. PMID 23576192
  104. Oldach L and Zhang J. Genetically encoded fluorescent biosensors for live-cell visualization of protein phosphorylation. Chem Biol. 2014; 21(2): 186-197. PMID 24485761
  105. Hu J*, Rho HS*, Newman RH*, Hwang W, Neiswinger J, Zhu H†, Zhang J†, Qian J†. Global analysis of phosphorylation networks in humans. *Equal contribution. †Co-corresponding authors. Biochim Biophys Acta. 2014; 1844(1 Pt B): 224-231. PMID 23524292
  106. Hu J, Rho HS, Newman RH, Zhang J, Zhu H, Qian J. PhosphoNetworks: a database for human phosphorylation networks. Bioinformatics. 2014; 30(1): 141-142. PMID 24227675
  107. Robinson KH, Yang JR, Zhang J. FRET and BRET-based biosensors in live cell compound screens. Methods Mol Biol. 2014; 1071: 217-225. PMID 24052392
  108. Aye-Han NH and Zhang J. Multi-parameter live cell imaging approach to monitor cyclic AMP and protein kinase A dynamics in parallel. Methods Mol Biol. 2014; 1071: 207-215. PMID 24052391
  109. Mehta S and Zhang J. Using a genetically encoded FRET-based reporter to visualize calcineurin phosphatase activity in living cells. Methods Mol Biol. 2014; 1071: 139-149. PMID 24052386
  110. Newman RH and Zhang J. The design and application of genetically encodable biosensors based on fluorescent proteins. Methods Mol Biol. 2014; 1071: 1-16. PMID 24052376
  111. Burdyga A, Conant A, Haynes L, Zhang J, Jalink K, Sutton R, Neoptolemos J, Costello E, Tepikin A. cAMP inhibits migration, ruffling and paxillin accumulation in focal adhesions of pancreatic ductal adenocarcinoma cells: Effects of PKA and EPAC. Biochim Biophys Acta. 2013; 1833(12): 2664-2672. PMID 23797058
  112. Mehta S and Zhang J. Using a kinase-inducible bimolecular switch to control enzyme activity in living cells. Curr Protoc Chem Biol. 2013; 5(3):227-237. PMID 24391085
  113. Woodard CL, Goodwin CR, Wan J, Xia S, Hu J, Newman R, Zhang J, Hayward, SD, Qian J, Laterra J, Zhu H. Profiling the dynamics of a human phosphorylome reveals new components in HGF/c-Met signaling. PLoS One. 2013; 8(9): e72671. PMID 24023761
  114. Nunes AR, Holmes APS, Sample V, Kumar P, Cann MJ, Monteiro EC, Zhang J, Gauda EB. Bicarbonate-sensitive soluble and transmembrane adenylyl cyclases in peripheral chemoreceptors. Respir Physiol Neurobiol. 2013; 188(2): 83-93. PMID 23727159
  115. Huang J, Yang JR, Zhang J†, Yang J†. Total synthesis and structure-activity relationship study of the potent cAMP signaling agonist (−)-Alotaketal A. †Co-corresponding authors. Org Biomol Chem. 2013; 11(19): 3212-3222. PMID 23584129
  116. Depry C, Mehta S, Zhang J. Multiplexed visualization of dynamic signaling networks using genetically encoded fluorescent protein-based biosensors. Pflugers Arch. 2013; 465(3): 373-381. PMID 23138230
  117. Sample V, Ni Q, Mehta S, Inoue T, Zhang J. Controlling enzymatic action in living cells with a kinase-inducible bimolecular switch. ACS Chem Biol. 2013; 8(1): 116-121. PMID 23072367
  118. Newman RE*, Hu J*, Rho H*, Xie Z*, Woodard C, Neiswinger J, Cooper C, Shirley M, Clark HM, Hu S, Hwang W, Jeong JS, Wu G, Lin J, Gao X, Ni Q, Goef R, Xia S, Ji H, Dalby KN, Birnbaum MJ, Cole PA, Knapp S, Ryazanov A, Zack DJ, Blackshaw S, Pawson T, Gingras A, Desiderio S, Pandey A, Turk BE, Zhang J†, Zhu H†, Qian J†. Construction of human activity-based phosphorylation networks. *Equal contribution. †Co-corresponding authors. Mol Syst Biol. 2013; 9: 655. PMID 23549483
  119. Dedecker P, Duwé S, Neely RK, Zhang J. Localizer: fast, accurate, open-source, and modular software package for superresolution microscopy. J Biomed Opt. 2012; 17(12): 126008. PMID 23208219
  120. Ghigo A, Perino A, Mehel H, Zahradníková A Jr, Morello F, Leroy J, Nikolaev VO, Damilano F, Cimino J, De Luca E, Richter W, Westenbroek R, Catterall WA, Zhang J, Yan C, Conti M, Gomez AM, Vandecasteele G, Hirsch E, Fischmeister R. Phosphoinositide 3-kinase γ protects against catecholamine-induced ventricular arrhythmia through protein kinase A-mediated regulation of distinct phosphodiesterases. Circulation. 2012; 126(17): 2073-2083. PMID 23008439
  121. Dancy BM, Crump NT, Peterson DJ, Mukherjee C, Bowers EM, Ahn YH, Yoshida M, Zhang J, Mahadevan LC, Meyers DJ, Boeke JD, Cole PA. Live cell studies of p300/CBP histone acetyltransferase activity and inhibition. ChemBioChem. 2012; 13(14): 2113-21. PMID 22961914
  122. Ferrando IM, Chaerkady R, Zhong J, Molina H, Jacob HKC, Herbst-Robinson K, Dancy BM, Katju V, Bose R, Zhang J, Pandey A, Cole PA. Identification of targets of c-Src tyrosine kinase by chemical complementation and phosphoproteomics. Mol Cell Proteomics. 2012; 11(8): 355-69. PMID 22499769
  123. Ganesan A and Zhang J. How cells process information: Quantification of spatiotemporal signaling information. Protein Sci. 2012; 21(7): 918-928. PMID 22573643
  124. Dedecker P, Mo GCH, Dertinger T, Zhang J. Widely accessible method for superresolution fluorescence imaging of living systems. Proc Natl Acad Sci USA. 2012; 109(27): 10909-10914. PMID 22711840
  125. Huang J, Yang JR, Zhang J†, Yang J†. Total synthesis of the potent cAMP signaling agonist (−)-Alotaketal A. †Co-corresponding authors. J Am Chem Soc. 2012; 134(21): 8806-8809. PMID 22563931
  126. Aye-Han NN, Allen MD, Ni Q, Zhang J. Parallel tracking of cAMP and PKA signaling dynamics in living cells with FRET-based fluorescent biosensors. Mol Biosyst. 2012; 8(5): 1435-1440. PMID 22362165
  127. Sample V*, DiPilato LM*, Yang JH*, Ni Q1, Saucerman JJ†, Zhang J†. Regulation of nuclear PKA revealed by spatiotemporal manipulation of cAMP. *Equal contribution. †Co-corresponding authors. Nat Chem Biol. 2012; 8(4): 375-382. PMID 22366721
  128. del Puerto A, Díaz-Hernández JI, Tapia M, Gómez-Villafuertes R, Benitez MJ, Zhang J, Miras-Portugal MT, Wandosell F, Díaz-Hernandez M, Garrido JJ. Adenylate cyclase 5 coordinates the action of ADP, P2Y1, P2Y13, and ATP-gated P2X7 receptors on axonal elongation. J Cell Sci. 2012; 125(Pt 1): 176-188. PMID 22250198
  129. Nunes AR, Sample V, Xiang YK, Monteiro EC, Gauda E, Zhang J. Effect of oxygen on phosphodiesterases (PDE) 3 and 4 isoforms and PKA activity in the superior cervical ganglia. Adv Exp Med Biol. 2012; 758: 287-294. PMID 23080174
  130. Zhou X, Herbst-Robinson KJ, Zhang J. Visualizing dynamic activities of signaling enzymes using genetically encodable FRET-based biosensors from designs to applications. Methods Enzymol. 2012; 504:317-340. PMID 22264542
  131. Herbst KJ, Allen MD, Zhang J. Spatiotemporally regulated protein kinase A activity is a critical regulator of growth factor-stimulated extracellular signal-regulated kinase signaling in PC12 cells. Mol Cell Biol. 2011; 31(19): 4063-4075. PMID 21807900
  132. Chakir K*, Depry C*, Dimaano VL, Zhu WZ, Vanderheyden M, Bartunek J, Abraham TP, Tomaselli GF, Liu SB, Xiang YK, Zhang M, Takimoto E, Dulin N, Xiao RP, Zhang J, Kass DA. *Equal contribution. Gαs-biased β2-adrenergic signaling from restoring synchronous contraction in the failing heart. Sci Transl Med. 2011; 3(100): 100ra88. PMID 21918105
  133. Gao X, Lowry PR, Zhou X, Depry C, Wei Z, Wong GW, Zhang J. PI3K/Akt signaling requires spatial compartmentalization in plasma membrane microdomains. Proc Natl Acad Sci USA. 2011; 108(35): 14509-14514. PMID 21873248
  134. Depry C and Zhang J. Using FRET-based reporters to visualize subcellular dynamics of protein kinase A activity. Methods Mol Biol. 2011; 756: 285-294. PMID 21870233
  135. Mehta S and Zhang J. Reporting from the field: Genetically encoded fluorescent reporters uncover signaling dynamics in living biological systems. Annu Rev Biochem. 2011; 80: 375-401. PMID 21495849
  136. Newman RH, Fosbrink MD, Zhang J. Genetically encoded fluorescent biosensors for tracking signaling dynamics in living cells. Chem Rev. 2011; 111(5): 3614-3666. PMID 21456512
  137. Herbst KJ, Allen MD, Zhang J. Luminescent kinase activity biosensors based on a versatile molecular switch. J Am Chem Soc. 2011; 133(15): 5676-5679. PMID 21438554
  138. Wan M, Li J, Herbst K, Zhang J, Yu B, Wu X, Qiu T, Lei W, Lindvall C, Williams BO, Ma H, Zhang F, Cao X. LRP6 mediates cAMP generation by G protein-coupled receptors through regulating the membrane targeting of Gα(s). Sci Signal. 2011; 4(164): ra15. PMID 21406690
  139. Herbst KJ, Coltharp C, Amzel LM, Zhang J. Direct activation of Epac by sulfonylurea is isoform selective. Chem Biol. 2011; 18(2): 243-251. PMID 21338921
  140. Ni Q*, Ganesan A*, Aye-Han NN*, Gao X, Allen MD, Levchenko A†, Zhang J†. Signaling diversity of PKA achieved via a Ca2+-cAMP-PKA oscillatory circuit. *Equal contribution. †Co-corresponding authors. Nat Chem Biol. 2011; 7(1): 34-40. PMID 21102470Depry C, Allen MD, Zhang J. Visualization of PKA activity in plasma membrane microdomains. Mol Biosyst. 2011; 7(1): 52-58. PMID 20838685
  141. Liu S, Zhang J, Y. Xiang. FRET-based direct detection of dynamic protein kinase A activity on the sarcoplasmic reticulum in cardiomyocytes. Biochem Biophys Res Commun. 2011; 404(2): 581-586. PMID 21130738
  142. Gildea JJ, Shah I, Weiss R, Casscells ND, McGrath HE, Zhang J, Jones JE, Felder RA. HK-2 human renal proximal tubule cells as a model for G protein-coupled receptor kinse type 4-mediated dopamine 1 receptor uncoupling. Hypertension. 2010; 56(3): 505-11. PMID 20660820
  143. Depry C and Zhang J. Visualization of kinase activity with FRET-based activity biosensors. Curr Protoc Mol Biol. 2010; Chapter 18: Unit 18.15 PMID 20583095
  144. Yamashiro T, Kuge H, Zhang J, Honke K. Calcineurin mediates the angiotensin II-induced aldosterone synthesis in the adrenal glands by upregulation of transcription of the CYP11B2 gene. J Biochem. 2010; 148(1): 115-123. PMID 20413672
  145. Fosbrink M, Aye-Han NN, Cheong R, Levchenko A, Zhang J. Visualization of JNK activity dynamics with a genetically encoded fluorescent biosensor. Proc Natl Acad Sci USA. 2010; 107(12): 5459-5464. PMID 20212108
  146. DiPilato LM and Zhang J. Fluorescent protein-based biosensors: resolving spatiotemporal dynamics of signaling. Curr Opin Chem Biol. 2010; 14(1): 37-42. PMID 19910237
  147. Gao X and Zhang J. FRET-based activity biosensors to probe compartmentalized signaling. ChemBioChem. 2010; 11(2): 147-151. PMID 20014085
  148. Gildea JJ, Israel JA, Johnson AK, Zhang J, Jose PA, Felder RA. Caveolin-1 and dopamine-mediated internalization of NaKATPase in human renal proximal tubule cells. Hypertension. 2009; 54(5): 1070-1076. PMID 19752292
  149. Aye-Han NN, Ni Q, Zhang J. Fluorescence biosensors for real-time tracking of post-translational modification dynamics. Curr Opin Chem Biol. 2009; 13(4): 392-397. PMID 19682946
  150. Sample V, Newman RH, Zhang J. The structure and function of fluorescent proteins. Chem Soc Rev. 2009; 38(10): 2852-2864. PMID 19771332
  151. Herbst KJ, Ni Q, Zhang J. Dynamic visualization of signal transduction in living cells: from second messengers to kinases. IUBMB Life. 2009; 61(9): 902-908. PMID 19603514
  152. DiPilato LM and Zhang J. The role of membrane microdomains in shaping β2-adrenergic receptor-mediated cAMP dynamics. Mol Biosyst. 2009; 5(8): 832-837. PMID 19603118
  153. Herbst KJ, Allen MD, Zhang J. The cAMP-dependent protein kinase inhibitor H-89 attenuates the bioluminescent signal produced by Renilla luciferase. PLoS One. 2009; 4(5): e5642. PMID 19461967
  154. Soto D, De Arcangelis V, Zhang J, Xiang Y. Dynamic protein kinase A activities induced by β adrenoceptors dictate signaling propagation for substrate phosphorylation and myocyte contraction. Circ Res. 2009; 104(6): 770-9. PMID 19213958
  155. Seong J, Lu S, Ouyang M, Huang H, Zhang J, Frame MC, Wang Y. Visualization of Src activity at different compartments of the plasma membrane by FRET imaging. Chem Biol. 2009; 16(1): 48-57. PMID 19171305
  156. Rahdar M, Inoue T, Meyer T, Zhang J, Vazquez F, Devreotes PN. A phosphorylation-dependent intramolecular interaction regulates the membrane association and activity of the tumor suppressor PTEN. Proc Natl Acad Sci USA. 2009; 106(2): 480-485. PMID 19114656
    157. Ren YR, Pan F, Parvez S, Fleig A, Chong CR, Xu J, Dang Y, Zhang J, Jiang H, Penner R, Liu JO. Clofazimine inhibits human Kv1.3 potassium channel by perturbing calcium oscillation in T lymphocytes. PLoS One. 2008; 3(12): e4009. PMID 19104661
  157. Lim CJ, Kain KH, Tkachenko E, Goldfinger LE, Gutierrez E, Allen MD, Groisman A, Zhang J, Ginsberg MH. Integrin-mediated protein kinase A activation at the leading edge of migrating cells. Mol Biol Cell. 2008; 19(11): 4930-4941. PMID 18784251
  158. Vincent P, Gervasi N, Zhang J. Real-time monitoring of cyclic nucleotide signaling in neurons using genetically encoded FRET probes. Brain Cell Biol. 2008; 36: 3-17. PMID 18941898
  159. Gao X and Zhang J. Spatiotemporal analysis of differential Akt regulation in plasma membrane microdomains. Mol Biol Cell. 2008; 19(10): 4366-4373. PMID 18701703
  160. Szewczuk LM, Tarrant MK, Sample V, Drury WJ 3rd, Zhang J, Cole PA. Analysis of serotonin N-acetyltransferase regulation in vitro and in live cells using protein semisynthesis. Biochemistry. 2008; 47(39): 10407-10419. PMID 18771288
  161. Lu S, Ouyang M, Seong J, Zhang J, Chien S, Wang Y. The spatiotemporal pattern of Src activation at lipid rafts revealed by diffusion-corrected FRET imaging. PLoS Comput Biol. 2008; 4(7): e1000127. PMID 18711637
  162. Newman RH and Zhang J. Visualization of phosphatase activity in living cells with a FRET-based calcineurin activity sensor. Mol Biosyst. 2008; 4(6): 496-501. PMID 18493642
  163. Violin JD*, DiPilato LM*, Yildrim N*, Elston TC†, Zhang J†, Lefkowitz RJ†. β2-adrenergic receptor signaling and desensitization elucidated by quantitative modeling of real-time cAMP dynamics. *Equal contribution. †Co-corresponding authors. J Biol Chem. 2008; 283(5): 2949-2961. PMID 18045878
  164. Allen MD and Zhang J. A tunable FRET circuit for engineering fluorescent biosensors. Angew Chem Int Ed Engl. 2008; 47(3): 500-502. PMID 18058965
  165. Ananthanarayanan B, Ni Q, Zhang J. Molecular sensors based on fluorescence resonance energy transfer to visualize cellular dynamics. Methods Cell Biol. 2008; 89: 37-57. PMID 19118671
  166. Ananthanarayanan B, Fosbrink M, Rahdar M, Zhang J. Live-cell molecular analysis of Akt activation reveals roles for activation loop phosphorylation. J Biol Chem. 2007; 282(50): 36634-36641. PMID 17928291
  167. Zhang J and Allen MD. FRET-based biosensors for protein kinases: illuminating the kinome. Mol Biosyst. 2007; 3(11): 759-765. PMID 17940658
  168. Sachs BD, Baillie GS, McCall JR, Passino MA, Schachtrup C, Wallace DA, Dunlop AJ, Mackenzie KF, Klussmann E, Lynch MJ, Sikorski SL, Nuriel T, Tsigelny I, Zhang J, Houslay MD, Chao MV, Akassoglou K. p75 neurotrophin receptor regulates tissue fibrosis through inhibition of plasminogen activation via a PDE4/cAMP/PKA pathway. J Cell Biol. 2007; 177(6): 1119-1132. PMID 17576803
  169. Maresh J, Zhang J, Tzeng YL, Goodman NA, Lynn DG. Rational design of inhibitors of VirA-VirG two-component signal transduction. Bioorg Med Chem Lett. 2007; 17: 3281-3286. PMID 17470391
  170. Gervasi N, Hepp R, Tricoire L, Zhang J, Lambolez B, Paupardin-Tritsch D, Vincent P. Dynamics of protein kinase A signaling at the membrane, in the cytosol, and in the nucleus of neurons in mouse brain slices. J Neurosci. 2007; 27(11): 2744-2750. PMID 17360896
  171. Dunn T, Wang CT, Colicos MA, Zaccolo M, DiPilato LM, Zhang J, Tsien RY, Feller MB. Imaging of cAMP levels and PKA activity reveals that retinal waves drive oscillations in second messenger cascades. J Neurosci. 2006; 26(49):12807-12815. PMID 17151284
  172. Ni Q, Titov DV, Zhang J. Analyzing protein kinase dynamics in living cells with FRET reporters. Methods. 2006; 40: 279-286. PMID 16908183
  173. Allen MD and Zhang J. Subcellular dynamics of protein kinase A activity visualized by FRET-based reporters. Biochem Biophys Res Commun. 2006; 348(2): 716-721. PMID 16895723
  174. Saucerman JJ, Zhang J, Martin JC, Peng LX, Stenbit AE, Tsien RY, McCulloch AD. Systems analysis of PKA-mediated phosphorylation gradients in cardiac myocytes. Proc Natl Acad Sci USA. 2006; 103(34): 12923-12928. PMID 16905651
  175. Allen MD, DiPilato LM, Rahdar M, Ren YR, Chong C, Liu JO, Zhang J. Reading dynamic kinase activity in living cells for high-throughput screening. ACS Chem Biol. 2006; 1(6): 371-376. PMID 17163774
  176. Maresh J*, Zhang J*, Lynn DG. The Innate Immunity of maize and the dynamic chemical strategies tegulating two-component signal transduction in Agrobacterium tumefaciens. *Equal contribution. ACS Chem Biol. 2006; 1(3): 165-175. PMID 17163664
  177. Qiao Y, Molina H, Pandey A, Zhang J, Cole PA. Chemical rescue of a mutant enzyme in living cells. Science. 2006; 311(5765): 1293-1297. PMID 16513984
  178. Ananthanarayanan B, Ni Q, Zhang J. Signal propagation from membrane messengers to nuclear effectors revealed by reporters of phosphoinositide dynamics and Akt activity. Proc Natl Acad Sci USA. 2005; 102(42): 15081-15086. PMID 16214892
  179. Zhang J*, Hupfeld CJ*, Taylor SS, Olefsky JM, Tsien RY. Insulin disrupts beta-adrenergic receptor signaling to protein kinase A in adipocytes. *Equal contribution. Nature. 2005; 437(7058): 569-573. PMID 16177793
  180. Kunkel MT, Ni Q, Tsien RY, Zhang J, Newton AC. Spatio-temporal dynamics of protein kinase B/Akt signaling revealed by a genetically encoded fluorescent reporter. J Biol Chem. 2005; 280(7): 5581-5587. PMID 15583002
  181. DiPilato LM, Cheng X, Zhang J. Fluorescent indicators of cAMP and Epac activation reveal differential dynamics of cAMP signaling within discrete subcellular compartments. Proc Natl Acad Sci USA. 2004; 101(47): 16513-16518. PMID 15545605
  182. Violin JD, Zhang J, Tsien RY, Newton AC. A genetically encoded fluorescent reporter reveals oscillatory phosphorylation by protein kinase C. J Cell Biol. 2003; 161(5): 899-909. PMID 12782683
  183. Zhang J, Campbell RE, Ting AY, Tsien RY. Creating new fluorescent probes for cell biology. Nat Rev Mol Cell Biol. 2002; 3(12): 906-918. PMID 12461557
  184. Zhang J, Ma Y, Taylor SS, Tsien RY. Genetically encoded reporters of protein kinase A activity reveal impact of substrate tethering. Proc Natl Acad Sci USA. 2001; 98(26): 14997-15002. PMID 11752448
  185. Zhang J, Boone L, Kocz R, Zhang C, Binns AN, Lynn DG. At the maize/Agrobacterium interface: natural factors limiting host transformation. Chem Biol. 2000; 7(8): 611-621. PMID 11048952
  186. Campbell AM, Tok JB, Zhang J, Wang Y, Stein M, Lynn DG, Binns AN. Xenognosin sensing in virulence: Is there a phenol receptor in Agrobacterium tumefaciens? Chem Biol. 2000; 7(1): 65-76. PMID 10662683